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GrainGenes Marker Report: POPA1_0957

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Locus	POPA1_0957
Type	SNP
Synonym	Other name 11_10957 BOPA1_11_10957 BOPA1_8166-525 Synonym 11_10957
Chromosome	1H
Chromosome Arm	1HS
Map	Barley, 2012 9KSNP 1H 47.5 Hordeum-OPA-2009-1H 49.34 Hordeum-OPA123-2008-1H 49.34 Hordeum-OPAConsensus-2011-1H 41.74
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_19180 i_11_10957
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0957 Marker name in barley OPA1 = 11_10957 Original SNP name = 8166-525 Most representative HarvEST:Barley Assembly #32 Unigene = 8166 Most representative HarvEST:Barley Assembly #35 Unigene = 19180 HarvEST Unigene 35 Probe Set = Contig10869_s_at Unigene 35 Rice Locus = LOC_Os05g05480 Description for best rice BLAST hit to Unigene 35 member = protease Do-like 2, chloroplast precursor, putative, expressed; E value = 2E-73 Description for best rice BLAST hit to Unigene 35 member = protein protease Do-like 2, chloroplast precursor, putative, expressed; E value = 2E-73 BLAST hit in the rice genome = protease Do-like 2, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_19180
Locus	POPA1_0957
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare