Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0959

[Submit comment/correction]

Locus	POPA1_0959
Type	SNP
Synonym	Other name 12_10959 BOPA2_12_10959 Synonym 12_10959
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 53 Hordeum-OPA-2009-7H 58.57 Hordeum-OPA123-2008-7H 58.57 Hordeum-OPAConsensus-2011-7H 52.52
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4364 i_12_10959
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0959 Marker name in barley OPA1 = 12_10959 Original SNP name = 8208-576 Most representative HarvEST:Barley Assembly #32 Unigene = 8208 Most representative HarvEST:Barley Assembly #35 Unigene = 4364 HarvEST Unigene 35 Probe Set = Contig10314_at Unigene 35 Rice Locus = LOC_Os02g54180 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-39 Marker name in barley OPA2 = 12_10959 Original SNP name = U32_5005_2035 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-39 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_4364
Locus	POPA1_0959
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare