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GrainGenes Marker Report: POPA1_0963

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Locus	POPA1_0963
Type	SNP
Chromosome	1H
Chromosome Arm	1HL
Map	Barley-Core-2014_1H 118.34 Hordeum-OPA-2009-1H 115.92 Hordeum-OPA123-2008-1H 115.92 Hordeum-OPAConsensus-2011-1H 117.24
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_5194
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0963 Most representative HarvEST:Barley Assembly #32 Unigene = 8301 Most representative HarvEST:Barley Assembly #35 Unigene = 5194 HarvEST Unigene 35 Probe Set = Contig11145_at Unigene 35 Rice Locus = LOC_Os10g28360 Description for best rice BLAST hit to Unigene 35 member = 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4, putative, expressed; E value = 3E-81 Original SNP name = 8301-678 Description for best rice BLAST hit to Unigene 35 member = protein 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4, putative, expressed; E value = 3E-81 BLAST hit in the rice genome = 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4, putative, expressed
Probe for Locus	HAR35_5194
Locus	POPA1_0963
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare