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GrainGenes Marker Report: POPA1_0977

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Locus	POPA1_0977
Type	SNP
Synonym	Other name 11_10977 BOPA1_11_10977 BOPA1_8501-449 Synonym 11_10977
Chromosome	2H
Chromosome Arm	2HL
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16496 i_11_10977
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0977 Marker name in barley OPA1 = 11_10977 Original SNP name = 8501-449 Most representative HarvEST:Barley Assembly #32 Unigene = 8501 Most representative HarvEST:Barley Assembly #35 Unigene = 16496 HarvEST Unigene 35 Probe Set = Contig10823_at; Contig9802_s_at Unigene 35 Rice Locus = LOC_Os11g36050 Description for best rice BLAST hit to Unigene 35 member = prefoldin subunit 2, putative, expressed; E value = 1E-65 BLAST hit in the rice genome = prefoldin subunit 2, putative, expressed
Probe for Locus	HAR35_16496
Locus	POPA1_0977