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GrainGenes Marker Report: POPA1_0987

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Locus
POPA1_0987
Type
SNP
Synonym
Other name11_10987
BOPA1_11_10987
BOPA1_864-594
Synonym11_10987
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H31.02
Hordeum-OPA123-2008-2H31.02
Hordeum-OPAConsensus-2011-2H31.91
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_14190
i_11_10987
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0987
Marker name in barley OPA1 = 11_10987
Original SNP name = 864-594
Most representative HarvEST:Barley Assembly #32 Unigene = 864
Most representative HarvEST:Barley Assembly #35 Unigene = 14190
HarvEST Unigene 35 Probe Set = Contig1327_at; Contig1338_s_at
Unigene 35 Rice Locus = LOC_Os07g48780
Description for best rice BLAST hit to Unigene 35 member = calmodulin, putative, expressed; E value = 1E-80
HarvEST Unigene 35 Probe Set = Contig1327_at, Contig1338_s_at
Description for best rice BLAST hit to Unigene 35 member = protein calmodulin, putative, expressed; E value = 1E-80
BLAST hit in the rice genome = calmodulin, putative, expressed


Probe for Locus
HAR35_14190
Locus
POPA1_0987
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare