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GrainGenes Marker Report: POPA1_0997

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Locus	POPA1_0997
Type	SNP
Synonym	Other name 11_10997 BOPA1_11_10997 BOPA1_8889-842 Synonym 11_10997
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 57.54 Hordeum-OPA123-2008-2H 57.54 Hordeum-OPAConsensus-2011-2H 62.85
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18752 i_11_10997
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0997 Marker name in barley OPA1 = 11_10997 Original SNP name = 8889-842 Most representative HarvEST:Barley Assembly #32 Unigene = 8889 Most representative HarvEST:Barley Assembly #35 Unigene = 18752 HarvEST Unigene 35 Probe Set = Contig11740_at Unigene 35 Rice Locus = LOC_Os07g40940 Description for best rice BLAST hit to Unigene 35 member = glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed; E value = 4E-79 Description for best rice BLAST hit to Unigene 35 member = protein glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed; E value = 4E-79 BLAST hit in the rice genome = glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
Probe for Locus	HAR35_18752
Locus	POPA1_0997
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare