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GrainGenes Marker Report: POPA1_1008

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Locus	POPA1_1008
Type	SNP
Synonym	Other name 12_11008 BOPA2_12_11008 Synonym 12_11008
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 93.95 Hordeum-OPA123-2008-1H 93.95 Hordeum-OPAConsensus-2011-1H 96.95 Hordeum-OWB-OPA2008-1H 101.94
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_19276 i_12_11008
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1008 Marker name in barley OPA1 = 12_11008 Original SNP name = 9279-368 Most representative HarvEST:Barley Assembly #32 Unigene = 9279 Most representative HarvEST:Barley Assembly #35 Unigene = 19276 HarvEST Unigene 35 Probe Set = Contig12133_at Unigene 35 Rice Locus = LOC_Os01g64690 Description for best rice BLAST hit to Unigene 35 member = U6 snRNA-associated Sm-like protein LSm3, putative, expressed; E value = 5E-46 Marker name in barley OPA2 = 12_11008 Original SNP name = U35_1704_1053 Description for best rice BLAST hit to Unigene 35 member = protein U6 snRNA-associated Sm-like protein LSm3, putative, expressed; E value = 5E-46 BLAST hit in the rice genome = U6 snRNA-associated Sm-like protein LSm3, putative, expressed
Probe for Locus	HAR35_19276
Locus	POPA1_1008
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare