GrainGenes Marker Report: POPA1_1024
Locus
POPA1_1024
Type
SNP
Synonym
Other name 11_11024 BOPA1_11_11024 BOPA1_971-682 Synonym 11_11024
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H 129.41 Hordeum-OPA123-2008-5H 129.41 Hordeum-OPAConsensus-2011-5H 121.67
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1579 i_11_11024
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1024 Marker name in barley OPA1 = 11_11024 Original SNP name = 971-682 Most representative HarvEST:Barley Assembly #32 Unigene = 971 Most representative HarvEST:Barley Assembly #35 Unigene = 1579 HarvEST Unigene 35 Probe Set = Contig1453_x_at; HI05C01u_s_at Unigene 35 Rice Locus = LOC_Os01g67134 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L5-1, putative, expressed; E value = 9E-61 HarvEST Unigene 35 Probe Set = Contig1453_x_at, HI05C01u_s_at Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L5-1, putative, expressed; E value = 9E-61 BLAST hit in the rice genome = 60S ribosomal protein L5-1, putative, expressed
Probe for Locus
HAR35_1579
Locus
POPA1_1024
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1024
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