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GrainGenes Marker Report: POPA1_1037

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Locus	POPA1_1037
Type	SNP
Synonym	Synonym 11_11037
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 84.69 Hordeum-OPA123-2008-1H 84.69 Hordeum-OPAConsensus-2011-1H 86.25
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_17561
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1037 Marker name in barley OPA1 = 11_11037 Original SNP name = ABC00697-pHv3016 Most representative HarvEST:Barley Assembly #32 Unigene = 455 Most representative HarvEST:Barley Assembly #35 Unigene = 17561 HarvEST Unigene 35 Probe Set = Contig697_s_at Unigene 35 Rice Locus = LOC_Os05g39390 Description for best rice BLAST hit to Unigene 35 member = outer membrane protein, OMP85 family protein, expressed; E value = 1E-168 Description for best rice BLAST hit to Unigene 35 member = protein outer membrane protein, OMP85 family protein, expressed; E value = 1E-168 BLAST hit in the rice genome = outer membrane protein, OMP85 family protein, expressed
Probe for Locus	HAR35_17561
Locus	POPA1_1037
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare