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GrainGenes Marker Report: POPA1_1040

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Locus	POPA1_1040
Type	SNP
Synonym	Other name 11_11040 BOPA1_11_11040 BOPA1_ABC01004-sfp18-05 Synonym 11_11040
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 19.27 Hordeum-OPA123-2008-2H 19.27 Hordeum-OPAConsensus-2011-2H 16.14 Hordeum-OWB-OPA2008-2H 21.992
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_351 i_11_11040
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1040 Marker name in barley OPA1 = 11_11040 Original SNP name = ABC01004-sfp18-05 Most representative HarvEST:Barley Assembly #32 Unigene = 559 Most representative HarvEST:Barley Assembly #35 Unigene = 351 HarvEST Unigene 35 Probe Set = Contig1004_x_at; Contig589_x_at; Contig842_x_at; Contig997_x_at Unigene 35 Rice Locus = LOC_Os12g19394 Description for best rice BLAST hit to Unigene 35 member = ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed; E value = 2E-85 HarvEST Unigene 35 Probe Set = Contig1004_x_at, Contig589_x_at, Contig842_x_at, Contig997_x_at Description for best rice BLAST hit to Unigene 35 member = protein ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed; E value = 2E-85 BLAST hit in the rice genome = ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_351
Locus	POPA1_1040 POPA2_0964
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare