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GrainGenes Marker Report: POPA1_1047

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Locus
POPA1_1047
Type
SNP
Synonym
Other name12_11047
BOPA2_12_11047
Synonym12_11047
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H141.54
Hordeum-OPA123-2008-3H141.54
Hordeum-OPAConsensus-2011-3H150.11
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_14994
i_12_11047
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_1047
Marker name in barley OPA1 = 12_11047
Original SNP name = ABC01665-pHv1099
Most representative HarvEST:Barley Assembly #32 Unigene = 1106
Most representative HarvEST:Barley Assembly #35 Unigene = 14994
HarvEST Unigene 35 Probe Set = HM01J06w_s_at; HV_CEb0003E19r2_at
Unigene 35 Rice Locus = LOC_Os01g70270
Description for best rice BLAST hit to Unigene 35 member = auxin response factor 2, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_11047
HarvEST Unigene 35 Probe Set = HM01J06w_s_at, HV_CEb0003E19r2_at
Description for best rice BLAST hit to Unigene 35 member = protein auxin response factor 2, putative, expressed; E value = 0
BLAST hit in the rice genome = auxin response factor 2, putative, expressed


Probe for Locus
HAR35_14994
Locus
POPA1_1047
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare