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GrainGenes Marker Report: POPA1_1052

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Locus
POPA1_1052
Type
SNP
Synonym
Synonym12_11052
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H19.11
Hordeum-OPA123-2008-7H19.11
Hordeum-OPAConsensus-2011-7H14.39
Hordeum-OWB-OPA2008-7H17.459
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_13755
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 1_1052
Marker name in barley OPA1 = 12_11052
Original SNP name = ABC01868-1-7-178
Most representative HarvEST:Barley Assembly #32 Unigene = 1256
Most representative HarvEST:Barley Assembly #35 Unigene = 13755
HarvEST Unigene 35 Probe Set = Contig1868_at; Contig1868_s_at
Unigene 35 Rice Locus = LOC_Os01g73220
Description for best rice BLAST hit to Unigene 35 member = peroxidase 12 precursor, putative, expressed; E value = 1E-136
Marker name in barley OPA2 = 12_11052
Original SNP name = U32_7875_471
HarvEST Unigene 35 Probe Set = Contig1868_at, Contig1868_s_at
Description for best rice BLAST hit to Unigene 35 member = protein peroxidase 12 precursor, putative, expressed; E value = 1E-136
BLAST hit in the rice genome = peroxidase 12 precursor, putative, expressed


Probe for Locus
HAR35_13755
Locus
POPA1_1052
POPA2_1460
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare