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GrainGenes Marker Report: POPA1_1055

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Locus
POPA1_1055
Type
SNP
Synonym
Other name12_11055
BOPA2_12_11055
Synonym12_11055
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H84.92
Hordeum-OPA123-2008-7H84.92
Hordeum-OPAConsensus-2011-7H85.28
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_118
i_12_11055
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1055
Marker name in barley OPA1 = 12_11055
Original SNP name = ABC01934-1-1-242
Most representative HarvEST:Barley Assembly #32 Unigene = 1302
Most representative HarvEST:Barley Assembly #35 Unigene = 118
HarvEST Unigene 35 Probe Set = Contig1934_at
Unigene 35 Rice Locus = LOC_Os08g09250
Description for best rice BLAST hit to Unigene 35 member = lactoylglutathione lyase, putative, expressed; E value = 1E-157
Marker name in barley OPA2 = 12_11055
Description for best rice BLAST hit to Unigene 35 member = protein lactoylglutathione lyase, putative, expressed; E value = 1E-157
BLAST hit in the rice genome = lactoylglutathione lyase, putative, expressed


Probe for Locus
HAR35_118
Locus
POPA1_1055
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare