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GrainGenes Marker Report: POPA1_1075

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Locus
POPA1_1075
Type
SNP
Synonym
Synonym11_11075
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H71.43
Hordeum-OPA123-2008-1H71.43
Hordeum-OPAConsensus-2011-1H75.48
Hordeum-OWB-OPA2008-1H79.676
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_15416
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_1075
Marker name in barley OPA1 = 11_11075
Original SNP name = ABC03430-1-1-265
Most representative HarvEST:Barley Assembly #32 Unigene = 2364
Most representative HarvEST:Barley Assembly #35 Unigene = 15416
HarvEST Unigene 35 Probe Set = Contig3430_at; Contig3432_s_at
Unigene 35 Rice Locus = LOC_Os01g14410
Description for best rice BLAST hit to Unigene 35 member = early light-induced protein, chloroplast precursor, putative, expressed; E value = 1E-62
Original SNP name = U32_825_2405
HarvEST Unigene 35 Probe Set = Contig3430_at, Contig3432_s_at
Description for best rice BLAST hit to Unigene 35 member = protein early light-induced protein, chloroplast precursor, putative, expressed; E value = 1E-62
BLAST hit in the rice genome = early light-induced protein, chloroplast precursor, putative, expressed


Probe for Locus
HAR35_15416
Locus
POPA1_1075
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare