Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1078

[Submit comment/correction]

Locus	POPA1_1078
Type	SNP
Synonym	Other name 12_11078 BOPA2_12_11078 Synonym 12_11078
Chromosome	1H
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_1070 i_12_11078
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1078 Marker name in barley OPA1 = 12_11078 Original SNP name = ABC03674-1-1-226 Most representative HarvEST:Barley Assembly #32 Unigene = 2564 Most representative HarvEST:Barley Assembly #35 Unigene = 1070 HarvEST Unigene 35 Probe Set = Contig3674_at; HS05F12u_s_at Unigene 35 Rice Locus = LOC_Os05g39990 Description for best rice BLAST hit to Unigene 35 member = alpha-expansin 1 precursor, putative, expressed; E value = 1E-133 BLAST hit in the rice genome = alpha-expansin 1 precursor, putative, expressed
Probe for Locus	HAR35_1070
Locus	POPA1_1078