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GrainGenes Marker Report: POPA1_1080

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Locus	POPA1_1080
Type	SNP
Synonym	Other name 11_11080 BOPA1_11_11080 BOPA1_ABC03900-1-2-406 Synonym 11_11080
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 125.8 Hordeum-OPA-2009-5H 137.16 Hordeum-OPA123-2008-5H 137.16 Hordeum-OPAConsensus-2011-5H 130.98
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15889 i_11_11080
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1080 Marker name in barley OPA1 = 11_11080 Original SNP name = ABC03900-1-2-406 Most representative HarvEST:Barley Assembly #32 Unigene = 2723 Most representative HarvEST:Barley Assembly #35 Unigene = 15889 HarvEST Unigene 35 Probe Set = Contig3900_at; Contig3901_s_at; rbaal21f05_s_at Unigene 35 Rice Locus = LOC_Os03g54130 Description for best rice BLAST hit to Unigene 35 member = cysteine protease 1 precursor, putative, expressed; E value = 1E-88 HarvEST Unigene 35 Probe Set = Contig3900_at, Contig3901_s_at, rbaal21f05_s_at Description for best rice BLAST hit to Unigene 35 member = protein cysteine protease 1 precursor, putative, expressed; E value = 1E-88 BLAST hit in the rice genome = cysteine protease 1 precursor, putative, expressed
Probe for Locus	HAR35_15889
Locus	POPA1_1080
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare