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GrainGenes Marker Report: POPA1_1094

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Locus	POPA1_1094
Type	SNP
Synonym	Synonym 11_11094
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 108.61 Hordeum-OPA123-2008-2H 108.61 Hordeum-OPAConsensus-2011-2H 119.72 Hordeum-OWB-OPA2008-2H 127.837
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_1742
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1094 Marker name in barley OPA1 = 11_11094 Original SNP name = ABC04580-1-4-420 Most representative HarvEST:Barley Assembly #32 Unigene = 3247 Most representative HarvEST:Barley Assembly #35 Unigene = 1742 HarvEST Unigene 35 Probe Set = Contig4580_at Unigene 35 Rice Locus = LOC_Os04g51400 Description for best rice BLAST hit to Unigene 35 member = zinc finger, C3HC4 type family protein, expressed; E value = 1E-124 Description for best rice BLAST hit to Unigene 35 member = protein zinc finger, C3HC4 type family protein, expressed; E value = 1E-124 BLAST hit in the rice genome = zinc finger, C3HC4 type family protein, expressed
Probe for Locus	HAR35_1742
Locus	POPA1_1094
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare