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GrainGenes Marker Report: POPA1_1098

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Locus
POPA1_1098
Type
SNP
Synonym
Other name11_11098
BOPA1_11_11098
BOPA1_ABC04803-1-1-392
Synonym11_11098
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H68.46
Hordeum-OPA123-2008-7H68.46
Hordeum-OPAConsensus-2011-7H64.98
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1398
i_11_11098
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1098
Marker name in barley OPA1 = 11_11098
Original SNP name = ABC04803-1-1-392
Most representative HarvEST:Barley Assembly #32 Unigene = 3397
Most representative HarvEST:Barley Assembly #35 Unigene = 1398
HarvEST Unigene 35 Probe Set = Contig4803_at; rbags11m06_s_at
Unigene 35 Rice Locus = LOC_Os06g12530
Description for best rice BLAST hit to Unigene 35 member = nuclear migration protein nudC, putative, expressed; E value = 1E-131
HarvEST Unigene 35 Probe Set = Contig4803_at, rbags11m06_s_at
Description for best rice BLAST hit to Unigene 35 member = protein nuclear migration protein nudC, putative, expressed; E value = 1E-131
BLAST hit in the rice genome = nuclear migration protein nudC, putative, expressed


Probe for Locus
HAR35_1398
Locus
POPA1_1098
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare