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GrainGenes Marker Report: POPA1_1099

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Locus
POPA1_1099
Type
SNP
Synonym
Other name11_11099
BOPA1_11_11099
BOPA1_ABC04826-1-1-174
Synonym11_11099
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H54.4
Hordeum-OPA123-2008-3H54.4
Hordeum-OPAConsensus-2011-3H67.27
Hordeum-OWB-OPA2008-3H62.951
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_1591
i_11_11099
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_1099
Marker name in barley OPA1 = 11_11099
Original SNP name = ABC04826-1-1-174
Most representative HarvEST:Barley Assembly #32 Unigene = 3399
Most representative HarvEST:Barley Assembly #35 Unigene = 1591
HarvEST Unigene 35 Probe Set = Contig4826_at
Unigene 35 Rice Locus = LOC_Os01g16870
Description for best rice BLAST hit to Unigene 35 member = argonaute-like protein, putative, expressed; E value = 0
Description for best rice BLAST hit to Unigene 35 member = protein argonaute-like protein, putative, expressed; E value = 0
BLAST hit in the rice genome = argonaute-like protein, putative, expressed


Probe for Locus
HAR35_1591
Locus
POPA1_1099
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare