Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1101

[Submit comment/correction]

Locus	POPA1_1101
Type	SNP
Synonym	Other name 11_11101 BOPA1_11_11101 BOPA1_ABC04893-1-1-248 Synonym 11_11101
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16205 i_11_11101
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 8 ] Marker name in barley Pilot OPA1 = 1_1101 Marker name in barley OPA1 = 11_11101 Original SNP name = ABC04893-1-1-248 Most representative HarvEST:Barley Assembly #32 Unigene = 3494 Most representative HarvEST:Barley Assembly #35 Unigene = 16205 HarvEST Unigene 35 Probe Set = Contig4893_at Unigene 35 Rice Locus = LOC_Os07g36190 BLAST hit in the rice genome = isopentenyl-diphosphate delta-isomerase II, putative, expressed
Probe for Locus	HAR35_16205
Locus	POPA1_1101