Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1102

[Submit comment/correction]

Locus	POPA1_1102
Type	SNP
Synonym	Other name 12_11102 BOPA2_12_11102 Synonym 12_11102
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 50.18 Hordeum-OPA123-2008-3H 50.18 Hordeum-OPAConsensus-2011-3H 59.83 Hordeum-OWB-OPA2008-3H 56.405
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1587 i_12_11102
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1102 Marker name in barley OPA1 = 12_11102 Original SNP name = ABC04904-1-1-135 Most representative HarvEST:Barley Assembly #32 Unigene = 3435 Most representative HarvEST:Barley Assembly #35 Unigene = 1587 HarvEST Unigene 35 Probe Set = Contig4904_at Unigene 35 Rice Locus = LOC_Os01g11810 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-102 Marker name in barley OPA2 = 12_11102 Original SNP name = U32_5137_933 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-102 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_1587
Locus	POPA1_1102 POPA2_1475
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare