Query (optional)   in Class  

GrainGenes Marker Report: POPA1_1105

[Submit comment/correction]

Locus
POPA1_1105
Type
SNP
Synonym
Other name11_11105
BOPA1_11_11105
BOPA1_ABC05061-1-1-159
Synonym11_11105
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H135.56
Hordeum-OPA123-2008-1H135.56
Hordeum-OPAConsensus-2011-1H138.86
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_2039
i_11_11105
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1105
Marker name in barley OPA1 = 11_11105
Original SNP name = ABC05061-1-1-159
Most representative HarvEST:Barley Assembly #32 Unigene = 3630
Most representative HarvEST:Barley Assembly #35 Unigene = 2039
HarvEST Unigene 35 Probe Set = Contig5061_at
Unigene 35 Rice Locus = LOC_Os05g50840
Description for best rice BLAST hit to Unigene 35 member = Grave disease carrier protein, putative, expressed; E value = 0
Original SNP name = U32_3959_548
Description for best rice BLAST hit to Unigene 35 member = protein Grave disease carrier protein, putative, expressed; E value = 0
BLAST hit in the rice genome = Grave disease carrier protein, putative, expressed


Probe for Locus
HAR35_2039
Locus
POPA1_1105
Synonym
SynonymCDO202
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare