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GrainGenes Marker Report: POPA1_1106

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Locus	POPA1_1106
Type	SNP
Synonym	Synonym 12_11106
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 94.43 Hordeum-OPA123-2008-5H 94.43 Hordeum-OPAConsensus-2011-5H 83.17
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1822
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1106 Marker name in barley OPA1 = 12_11106 Original SNP name = ABC05080-pHv516 Most representative HarvEST:Barley Assembly #32 Unigene = 3632 Most representative HarvEST:Barley Assembly #35 Unigene = 1822 HarvEST Unigene 35 Probe Set = Contig5080_at Unigene 35 Rice Locus = LOC_Os07g12110 Description for best rice BLAST hit to Unigene 35 member = eukaryotic translation initiation factor 3 subunit 6, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_11106 Description for best rice BLAST hit to Unigene 35 member = protein eukaryotic translation initiation factor 3 subunit 6, putative, expressed; E value = 0 BLAST hit in the rice genome = eukaryotic translation initiation factor 3 subunit 6, putative, expressed
Probe for Locus	HAR35_1822
Locus	POPA1_1106
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare