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GrainGenes Marker Report: POPA1_1110

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Locus	POPA1_1110
Type	SNP
Synonym	Synonym 11_11110
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 32.17 Hordeum-OPA123-2008-2H 32.17 Hordeum-OPAConsensus-2011-2H 32.98
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1841
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1110 Marker name in barley OPA1 = 11_11110 Original SNP name = ABC05236-1-10-217 Most representative HarvEST:Barley Assembly #32 Unigene = 3741 Most representative HarvEST:Barley Assembly #35 Unigene = 1841 HarvEST Unigene 35 Probe Set = Contig5236_at Unigene 35 Rice Locus = LOC_Os07g48510 Description for best rice BLAST hit to Unigene 35 member = thioredoxin-like 1, putative, expressed; E value = 1E-114 Description for best rice BLAST hit to Unigene 35 member = protein thioredoxin-like 1, putative, expressed; E value = 1E-114 BLAST hit in the rice genome = thioredoxin-like 1, putative, expressed
Probe for Locus	HAR35_1841
Locus	POPA1_1110
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare