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GrainGenes Marker Report: POPA1_1114

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Locus	POPA1_1114
Type	SNP
Synonym	Other name 11_11114 BOPA1_11_11114 BOPA1_ABC05369-1-3-231 Synonym 11_11114
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 54.25 Hordeum-OPA123-2008-4H 54.25 Hordeum-OPAConsensus-2011-4H 59.8
	[ Show Nearby Loci ]
QTL with Locus Marker	MQTL_Du2024.yield-4H.4
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2035 i_11_11114
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1114 Marker name in barley OPA1 = 11_11114 Original SNP name = ABC05369-1-3-231 Most representative HarvEST:Barley Assembly #32 Unigene = 3839 Most representative HarvEST:Barley Assembly #35 Unigene = 2035 HarvEST Unigene 35 Probe Set = Contig5369_at Unigene 35 Rice Locus = LOC_Os03g18850 Description for best rice BLAST hit to Unigene 35 member = pathogenesis-related protein 1, putative, expressed; E value = 2E-79 Description for best rice BLAST hit to Unigene 35 member = protein pathogenesis-related protein 1, putative, expressed; E value = 2E-79 BLAST hit in the rice genome = pathogenesis-related protein 1, putative, expressed
Probe for Locus	HAR35_2035
Locus	POPA1_1114
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare