GrainGenes Marker Report: POPA1_1116
Locus
POPA1_1116
Type
SNP
Chromosome
1H
Map
Barley-Core-2014_1H 116.83 Hordeum-OPAConsensus-2011-1H 116.24
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_16650
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ] Marker name in barley Pilot OPA1 = 1_1116 Most representative HarvEST:Barley Assembly #32 Unigene = 3894 Most representative HarvEST:Barley Assembly #35 Unigene = 16650 HarvEST Unigene 35 Probe Set = Contig5481_at; HS06G05u_s_at Unigene 35 Rice Locus = LOC_Os02g15250 Description for best rice BLAST hit to Unigene 35 member = mucin-associated surface protein, putative, expressed; E value = 6E-80 BLAST hit in the rice genome = mucin-associated surface protein, putative, expressed
Probe for Locus
HAR35_16650
Locus
POPA1_1116 POPA2_1478
GrainGenes Marker Report: POPA1_1116
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