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GrainGenes Marker Report: POPA1_1118

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Locus	POPA1_1118
Type	SNP
Synonym	Other name 11_11118 BOPA1_11_11118 BOPA1_ABC05640-1-1-248 Synonym 11_11118
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 113.48 Hordeum-OPA123-2008-2H 113.48 Hordeum-OPAConsensus-2011-2H 128.87
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2021 i_11_11118
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1118 Marker name in barley OPA1 = 11_11118 Original SNP name = ABC05640-1-1-248 Most representative HarvEST:Barley Assembly #32 Unigene = 4003 Most representative HarvEST:Barley Assembly #35 Unigene = 2021 HarvEST Unigene 35 Probe Set = Contig5640_at Unigene 35 Rice Locus = LOC_Os04g52710 Description for best rice BLAST hit to Unigene 35 member = imidazoleglycerol-phosphate dehydratase, putative, expressed; E value = 1E-126 Description for best rice BLAST hit to Unigene 35 member = protein imidazoleglycerol-phosphate dehydratase, putative, expressed; E value = 1E-126 BLAST hit in the rice genome = imidazoleglycerol-phosphate dehydratase, putative, expressed
Probe for Locus	HAR35_2021
Locus	POPA1_1118
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare