GrainGenes Marker Report: POPA1_1119
Locus
POPA1_1119
Type
SNP
Synonym
Synonym 12_11119
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H 10.06 Hordeum-OPA123-2008-2H 10.06 Hordeum-OPAConsensus-2011-2H 10.86
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_2282
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1119 Marker name in barley OPA1 = 12_11119 Original SNP name = ABC05684-pHv2534-05 Most representative HarvEST:Barley Assembly #32 Unigene = 4084 Most representative HarvEST:Barley Assembly #35 Unigene = 2282 HarvEST Unigene 35 Probe Set = Contig5684_at Unigene 35 Rice Locus = LOC_Os04g01240 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-99 Marker name in barley OPA2 = 12_11119 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-99 BLAST hit in the rice genome = expressed protein
Probe for Locus
HAR35_2282
Locus
POPA1_1119
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1119
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