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GrainGenes Marker Report: POPA1_1121

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Locus	POPA1_1121
Type	SNP
Synonym	Other name 12_11121 BOPA2_12_11121 Synonym 12_11121
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 67.54 Hordeum-OPA123-2008-2H 67.54 Hordeum-OPAConsensus-2011-2H 76.61
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2107 i_12_11121
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1121 Marker name in barley OPA1 = 12_11121 Original SNP name = ABC05800-1-1-142 Most representative HarvEST:Barley Assembly #32 Unigene = 4207 Most representative HarvEST:Barley Assembly #35 Unigene = 2107 HarvEST Unigene 35 Probe Set = Contig5800_at; HVSMEc0014M08r2_s_at Unigene 35 Rice Locus = LOC_Os04g37920 Description for best rice BLAST hit to Unigene 35 member = cryptochrome 1 apoprotein, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_11121 HarvEST Unigene 35 Probe Set = Contig5800_at, HVSMEc0014M08r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein cryptochrome 1 apoprotein, putative, expressed; E value = 0 BLAST hit in the rice genome = cryptochrome 1 apoprotein, putative, expressed
Probe for Locus	HAR35_2107
Locus	POPA1_1121
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare