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GrainGenes Marker Report: POPA1_1127

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Locus
POPA1_1127
Type
SNP
Synonym
Other name11_11127
BOPA1_11_11127
BOPA1_ABC05919-1-2-157
Synonym11_11127
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H136.66
Hordeum-OPA123-2008-3H136.66
Hordeum-OPAConsensus-2011-3H145.84
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16642
i_11_11127
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1127
Marker name in barley OPA1 = 11_11127
Original SNP name = ABC05919-1-2-157
Most representative HarvEST:Barley Assembly #32 Unigene = 4333
Most representative HarvEST:Barley Assembly #35 Unigene = 16642
HarvEST Unigene 35 Probe Set = Contig5919_at; Contig5920_s_at
Unigene 35 Rice Locus = LOC_Os01g70200
HarvEST Unigene 35 Probe Set = Contig5919_at, Contig5920_s_at
Description for best rice BLAST hit to Unigene 35 member = protein secondary cell wall-related glycosyltransferase family 47, putative, expressed; E value = 0
BLAST hit in the rice genome = secondary cell wall-related glycosyltransferase family 47, putative, expressed


Probe for Locus
HAR35_16642
Locus
POPA1_1127
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare