GrainGenes Marker Report: POPA1_1129
Locus
POPA1_1129
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H 43.92 Hordeum-OPA-2009-5H 51.6 Hordeum-OPA123-2008-5H 51.6 Hordeum-OPAConsensus-2011-5H 42.41
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_14592
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1129 Most representative HarvEST:Barley Assembly #32 Unigene = 4300 Most representative HarvEST:Barley Assembly #35 Unigene = 14592 HarvEST Unigene 35 Probe Set = Contig5953_at Unigene 35 Rice Locus = LOC_Os11g04720 Description for best rice BLAST hit to Unigene 35 member = OsRR9 - Rice type-A response regulator, expressed; E value = 3E-74 Original SNP name = ABC05953-1-1-182 Description for best rice BLAST hit to Unigene 35 member = protein OsRR9 - Rice type-A response regulator, expressed; E value = 3E-74 BLAST hit in the rice genome = OsRR9 - Rice type-A response regulator, expressed
Probe for Locus
HAR35_14592
Locus
POPA1_1129
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1129
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