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GrainGenes Marker Report: POPA1_1155

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Locus	POPA1_1155
Type	SNP
Synonym	Synonym 12_11155
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 58.9 Hordeum-OPA123-2008-2H 58.9 Hordeum-OPAConsensus-2011-2H 66.2 Hordeum-OWB-OPA2008-2H 72.752
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_16303
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1155 Marker name in barley OPA1 = 12_11155 Original SNP name = ABC06958-1-4-146 Most representative HarvEST:Barley Assembly #32 Unigene = 5044 Most representative HarvEST:Barley Assembly #35 Unigene = 16303 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os07g35260 Description for best rice BLAST hit to Unigene 35 member = serine/threonine kinase-like protein, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_11155 Original SNP name = U32_5133_159 Description for best rice BLAST hit to Unigene 35 member = protein serine/threonine kinase-like protein, putative, expressed; E value = 0 BLAST hit in the rice genome = serine/threonine kinase-like protein, putative, expressed
Probe for Locus	HAR35_16303
Locus	POPA1_1155
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare