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GrainGenes Marker Report: POPA1_1162

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Locus	POPA1_1162
Type	SNP
Synonym	Other name 11_11162 BOPA1_11_11162 BOPA1_ABC07133-1-1-56 Synonym 11_11162
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 49.7 Hordeum-OPA123-2008-1H 49.7 Hordeum-OPAConsensus-2011-1H 45.2
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3046 i_11_11162
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1162 Marker name in barley OPA1 = 11_11162 Original SNP name = ABC07133-1-1-56 Most representative HarvEST:Barley Assembly #32 Unigene = 5189 Most representative HarvEST:Barley Assembly #35 Unigene = 3046 HarvEST Unigene 35 Probe Set = Contig7133_at; HY03H15u_s_at Unigene 35 Rice Locus = LOC_Os05g07680 Description for best rice BLAST hit to Unigene 35 member = CENP-E like kinetochore protein, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig7133_at, HY03H15u_s_at Description for best rice BLAST hit to Unigene 35 member = protein CENP-E like kinetochore protein, putative, expressed; E value = 0 BLAST hit in the rice genome = CENP-E like kinetochore protein, putative, expressed
Probe for Locus	HAR35_3046
Locus	POPA1_1162
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare