Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1164

[Submit comment/correction]

Locus	POPA1_1164
Type	SNP
Synonym	Other name 12_11164 BOPA2_12_11164 Synonym 12_11164
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16081 i_12_11164
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1164 Marker name in barley OPA1 = 12_11164 Original SNP name = ABC07194-1-5-373 Most representative HarvEST:Barley Assembly #32 Unigene = 5188 Most representative HarvEST:Barley Assembly #35 Unigene = 16081 HarvEST Unigene 35 Probe Set = Contig7194_at Unigene 35 Rice Locus = LOC_Os03g55240 Description for best rice BLAST hit to Unigene 35 member = cytochrome P450 81E1, putative, expressed; E value = 0 BLAST hit in the rice genome = cytochrome P450 81E1, putative, expressed
Probe for Locus	HAR35_16081
Locus	POPA1_1164