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GrainGenes Marker Report: POPA1_1165

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Locus
POPA1_1165
Type
SNP
Chromosome
1H
Map
Barley-Core-2014_1H0
Hordeum-OPAConsensus-2011-1H0
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, USDA Core, 2014 Consensus
Probe
HAR35_3155
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ]
Marker name in barley Pilot OPA1 = 1_1165
Most representative HarvEST:Barley Assembly #32 Unigene = 5304
Most representative HarvEST:Barley Assembly #35 Unigene = 3155
HarvEST Unigene 35 Probe Set = Contig7299_at
Unigene 35 Rice Locus = LOC_Os04g30210
Description for best rice BLAST hit to Unigene 35 member = ubiquitin-protein ligase, putative, expressed; E value = 1E-150
BLAST hit in the rice genome = ubiquitin-protein ligase, putative, expressed



Probe for Locus
HAR35_3155
Locus
POPA1_1165
POPA2_0914