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GrainGenes Marker Report: POPA1_1183

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Locus	POPA1_1183
Type	SNP
Synonym	Other name 12_11183 BOPA2_12_11183 Synonym 12_11183
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 100.74 Hordeum-OPA123-2008-4H 100.74 Hordeum-OPAConsensus-2011-4H 111.81
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16019 i_12_11183
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 1_1183 Marker name in barley OPA1 = 12_11183 Original SNP name = ABC07893-1-1-175 Most representative HarvEST:Barley Assembly #32 Unigene = 5920 Most representative HarvEST:Barley Assembly #35 Unigene = 16019 HarvEST Unigene 35 Probe Set = Contig7893_at; EBro07_SQ003_E20_s_at Unigene 35 Rice Locus = LOC_Os03g03820 Description for best rice BLAST hit to Unigene 35 member = adenylate kinase, chloroplast precursor, putative, expressed; E value = 1E-138 Marker name in barley OPA2 = 12_11183 Original SNP name = ABC10937_1_696 HarvEST Unigene 35 Probe Set = Contig7893_at, EBro07_SQ003_E20_s_at Description for best rice BLAST hit to Unigene 35 member = protein adenylate kinase, chloroplast precursor, putative, expressed; E value = 1E-138 BLAST hit in the rice genome = adenylate kinase, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_16019
Locus	POPA1_1183
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare