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GrainGenes Marker Report: POPA1_1192

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Locus
POPA1_1192
Type
SNP
Synonym
Other name12_11192
BOPA2_12_11192
Synonym12_11192
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H191.39
Hordeum-OPA123-2008-5H191.39
Hordeum-OPAConsensus-2011-5H186.66
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_17839
i_12_11192
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1192
Marker name in barley OPA1 = 12_11192
Original SNP name = ABC08225-1-1-100
Most representative HarvEST:Barley Assembly #32 Unigene = 6240
Most representative HarvEST:Barley Assembly #35 Unigene = 17839
HarvEST Unigene 35 Probe Set = Contig8225_at
Unigene 35 Rice Locus = LOC_Os03g63750
Description for best rice BLAST hit to Unigene 35 member = heat shock factor protein HSF8, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_11192
Description for best rice BLAST hit to Unigene 35 member = protein heat shock factor protein HSF8, putative, expressed; E value = 0
BLAST hit in the rice genome = heat shock factor protein HSF8, putative, expressed


Probe for Locus
HAR35_17839
Locus
POPA1_1192
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare