Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1200

[Submit comment/correction]

Locus	POPA1_1200
Type	SNP
Synonym	Other name 11_11200 BOPA1_11_11200 BOPA1_ABC08402-1-2-97 Synonym 11_11200
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 117.47 Hordeum-OPA123-2008-5H 117.47 Hordeum-OPAConsensus-2011-5H 109.48
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2608 i_11_11200
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1200 Marker name in barley OPA1 = 11_11200 Original SNP name = ABC08402-1-2-97 Most representative HarvEST:Barley Assembly #32 Unigene = 6135 Most representative HarvEST:Barley Assembly #35 Unigene = 2608 HarvEST Unigene 35 Probe Set = Contig8402_at Unigene 35 Rice Locus = LOC_Os09g37100 Description for best rice BLAST hit to Unigene 35 member = phospholipase D delta, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein phospholipase D delta, putative, expressed; E value = 0 BLAST hit in the rice genome = phospholipase D delta, putative, expressed
Probe for Locus	HAR35_2608
Locus	POPA1_1200
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare