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GrainGenes Marker Report: POPA1_1208

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Locus	POPA1_1208
Type	SNP
Synonym	Other name 12_11208 BOPA2_12_11208 Synonym 12_11208
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_3496 i_12_11208
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1208 Marker name in barley OPA1 = 12_11208 Original SNP name = ABC08790-1-5-160 Most representative HarvEST:Barley Assembly #32 Unigene = 6757 Most representative HarvEST:Barley Assembly #35 Unigene = 3496 HarvEST Unigene 35 Probe Set = Contig8790_at Unigene 35 Rice Locus = LOC_Os01g71000 Description for best rice BLAST hit to Unigene 35 member = protein kinase APK1B, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = protein kinase APK1B, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_3496
Locus	POPA1_1208