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GrainGenes Marker Report: POPA1_1219

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Locus	POPA1_1219
Type	SNP
Synonym	Other name 11_11219 BOPA1_11_11219 BOPA1_ABC09320-1-1-112 Synonym 11_11219
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 79.6 Hordeum-OPA123-2008-7H 79.6 Hordeum-OPAConsensus-2011-7H 82.2
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17616 i_11_11219
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1219 Marker name in barley OPA1 = 11_11219 Original SNP name = ABC09320-1-1-112 Most representative HarvEST:Barley Assembly #32 Unigene = 7027 Most representative HarvEST:Barley Assembly #35 Unigene = 17616 HarvEST Unigene 35 Probe Set = Contig9320_at; HVSMEf0019G08r2_s_at Unigene 35 Rice Locus = LOC_Os08g02230 Description for best rice BLAST hit to Unigene 35 member = FAD binding domain containing protein, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig9320_at, HVSMEf0019G08r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein FAD binding domain containing protein, putative, expressed; E value = 0 BLAST hit in the rice genome = FAD binding domain containing protein, putative, expressed
Probe for Locus	HAR35_17616
Locus	POPA1_1219
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare