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GrainGenes Marker Report: POPA1_1222

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Locus	POPA1_1222
Type	SNP
Synonym	Other name 11_11222 BOPA1_11_11222 BOPA1_ABC09375-pHv500-02 Synonym 11_11222
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPAConsensus-2011-7H 4.5
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_17157 i_11_11222
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1222 Marker name in barley OPA1 = 11_11222 Original SNP name = ABC09375-pHv500-02 Most representative HarvEST:Barley Assembly #32 Unigene = 7005 Most representative HarvEST:Barley Assembly #35 Unigene = 17157 HarvEST Unigene 35 Probe Set = rbasd15h01_s_at Unigene 35 Rice Locus = LOC_Os06g02180 Description for best rice BLAST hit to Unigene 35 member = CSLD2 - cellulose synthase-like family D, expressed; E value = 0 BLAST hit in the rice genome = CSLD2 - cellulose synthase-like family D, expressed
Probe for Locus	HAR35_17157
Locus	POPA1_1222