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GrainGenes Marker Report: POPA1_1252

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Locus	POPA1_1252
Type	SNP
Synonym	Other name 12_11252 BOPA2_12_11252 Synonym 12_11252
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_17049 i_12_11252
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1252 Marker name in barley OPA1 = 12_11252 Original SNP name = ABC10514-1-2-234 Most representative HarvEST:Barley Assembly #32 Unigene = 8147 Most representative HarvEST:Barley Assembly #35 Unigene = 17049 HarvEST Unigene 35 Probe Set = Contig10514_at; Contig24279_at; HS18B10u_s_at Unigene 35 Rice Locus = LOC_Os03g55350 Description for best rice BLAST hit to Unigene 35 member = subtilisin-like protease precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = subtilisin-like protease precursor, putative, expressed
Probe for Locus	HAR35_17049
Locus	POPA1_1252