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GrainGenes Marker Report: POPA1_1254

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Locus	POPA1_1254
Type	SNP
Synonym	Other name 12_11254 BOPA2_12_11254 Synonym 12_11254
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_4479 i_12_11254
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1254 Marker name in barley OPA1 = 12_11254 Original SNP name = ABC10546-1-2-488 Most representative HarvEST:Barley Assembly #32 Unigene = 7980 Most representative HarvEST:Barley Assembly #35 Unigene = 4479 HarvEST Unigene 35 Probe Set = Contig10546_at Unigene 35 Rice Locus = LOC_Os06g28050 Description for best rice BLAST hit to Unigene 35 member = 3Fe-4S ferredoxin, putative, expressed; E value = 1E-79 BLAST hit in the rice genome = 3Fe-4S ferredoxin, putative, expressed
Probe for Locus	HAR35_4479
Locus	POPA1_1254 POPA2_1492
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare