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GrainGenes Marker Report: POPA1_1256

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Locus	POPA1_1256
Type	SNP
Synonym	Other name 11_11256 BOPA1_11_11256 BOPA1_ABC10636-1-4-285 Synonym 11_11256
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 55.49 Hordeum-OPA123-2008-1H 55.49 Hordeum-OPAConsensus-2011-1H 49.65 Hordeum-OWB-OPA2008-1H 62.086
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_4520 i_11_11256
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1256 Marker name in barley OPA1 = 11_11256 Original SNP name = ABC10636-1-4-285 Most representative HarvEST:Barley Assembly #32 Unigene = 7878 Most representative HarvEST:Barley Assembly #35 Unigene = 4520 HarvEST Unigene 35 Probe Set = Contig10636_at; Contig10637_s_at Unigene 35 Rice Locus = LOC_Os10g39790 Description for best rice BLAST hit to Unigene 35 member = metal ion transporter, putative, expressed; E value = 0 Original SNP name = ABC15205_1_425 HarvEST Unigene 35 Probe Set = Contig10636_at, Contig10637_s_at Description for best rice BLAST hit to Unigene 35 member = protein metal ion transporter, putative, expressed; E value = 0 BLAST hit in the rice genome = metal ion transporter, putative, expressed
Probe for Locus	HAR35_4520
Locus	POPA1_1256
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare