GrainGenes Marker Report: POPA1_1280
Locus
POPA1_1280
Type
SNP
Chromosome
2H
Chromosome Arm
2HL
Map
Barley-Core-2014_2H 178.17 Hordeum-OPA-2009-2H 158.87 Hordeum-OPA123-2008-2H 158.87 Hordeum-OPAConsensus-2011-2H 171.47
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_5369
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1280 Most representative HarvEST:Barley Assembly #32 Unigene = 9109 Most representative HarvEST:Barley Assembly #35 Unigene = 5369 HarvEST Unigene 35 Probe Set = Contig11420_at Unigene 35 Rice Locus = LOC_Os02g22260 Description for best rice BLAST hit to Unigene 35 member = fruit protein PKIWI502, putative, expressed; E value = 1E-60 Original SNP name = ABC11420-sfp45-04 Original SNP name = U32_14697_157 Description for best rice BLAST hit to Unigene 35 member = protein fruit protein PKIWI502, putative, expressed; E value = 1E-60 BLAST hit in the rice genome = fruit protein PKIWI502, putative, expressed
Probe for Locus
HAR35_5369
Locus
POPA2_1496 POPA1_1280
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1280
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