Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1291

[Submit comment/correction]

Locus	POPA1_1291
Type	SNP
Synonym	Other name 11_11291 BOPA1_11_11291 BOPA1_ABC11989-1-2-148 Synonym 11_11291
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 71 Hordeum-OPA-2009-7H 79.6 Hordeum-OPA123-2008-7H 79.6 Hordeum-OPAConsensus-2011-7H 81.78 Hordeum-OWB-OPA2008-7H 80.664
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1897 i_11_11291
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1291 Marker name in barley OPA1 = 11_11291 Original SNP name = ABC11989-1-2-148 Most representative HarvEST:Barley Assembly #32 Unigene = 9402 Most representative HarvEST:Barley Assembly #35 Unigene = 1897 HarvEST Unigene 35 Probe Set = Contig11989_at; Contig12286_s_at Unigene 35 Rice Locus = LOC_Os08g35710 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 4E-88 Original SNP name = OSU_Contig742_at_365 HarvEST Unigene 35 Probe Set = Contig11989_at, Contig12286_s_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 4E-88 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_1897
Locus	POPA1_1291
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare