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GrainGenes Marker Report: POPA1_1293

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Locus	POPA1_1293
Type	SNP
Synonym	Other name 11_11293 BOPA1_11_11293 BOPA1_ABC12199-1-1-25 Synonym 11_11293
Chromosome	1H
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_19163 i_11_11293
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1293 Marker name in barley OPA1 = 11_11293 Original SNP name = ABC12199-1-1-25 Most representative HarvEST:Barley Assembly #32 Unigene = 8326 Most representative HarvEST:Barley Assembly #35 Unigene = 19163 HarvEST Unigene 35 Probe Set = Contig12199_at Unigene 35 Rice Locus = LOC_Os05g04500 Description for best rice BLAST hit to Unigene 35 member = peroxidase 63 precursor, putative, expressed; E value = 1E-138 BLAST hit in the rice genome = peroxidase 63 precursor, putative, expressed
Probe for Locus	HAR35_19163
Locus	POPA1_1293