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GrainGenes Marker Report: POPA1_1299

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Locus	POPA1_1299
Type	SNP
Synonym	Other name 11_11299 BOPA1_11_11299 BOPA1_ABC12417-1-1-46 Synonym 11_11299
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 110.7 Hordeum-OPA-2009-4H 111.68 Hordeum-OPA123-2008-4H 111.68 Hordeum-OPAConsensus-2011-4H 119.62
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_19379 i_11_11299
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1299 Marker name in barley OPA1 = 11_11299 Original SNP name = ABC12417-1-1-46 Most representative HarvEST:Barley Assembly #32 Unigene = 9715 Most representative HarvEST:Barley Assembly #35 Unigene = 19379 HarvEST Unigene 35 Probe Set = Contig12417_at Unigene 35 Rice Locus = LOC_Os03g02750 Description for best rice BLAST hit to Unigene 35 member = xylem serine proteinase 1 precursor, putative, expressed; E value = 1E-146 Description for best rice BLAST hit to Unigene 35 member = protein xylem serine proteinase 1 precursor, putative, expressed; E value = 1E-146 BLAST hit in the rice genome = xylem serine proteinase 1 precursor, putative, expressed
Probe for Locus	HAR35_19379
Locus	POPA1_1299
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare