Query (optional)   in Class  

GrainGenes Marker Report: POPA1_1300

[Submit comment/correction]

Locus
POPA1_1300
Type
SNP
Synonym
Other name12_11300
BOPA2_12_11300
Synonym12_11300
Chromosome
4H
Chromosome Arm
4HS
Map
Hordeum-OPA-2009-4H12.02
Hordeum-OPA123-2008-4H12.02
Hordeum-OPAConsensus-2011-4H12.34
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_20156
i_12_11300
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1300
Marker name in barley OPA1 = 12_11300
Original SNP name = ABC12449-1-3-227
Most representative HarvEST:Barley Assembly #32 Unigene = 9442
Most representative HarvEST:Barley Assembly #35 Unigene = 20156
HarvEST Unigene 35 Probe Set = Contig12449_at
Unigene 35 Rice Locus = LOC_Os03g47740
Description for best rice BLAST hit to Unigene 35 member = BEL1-related homeotic protein 30, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_11300
Description for best rice BLAST hit to Unigene 35 member = protein BEL1-related homeotic protein 30, putative, expressed; E value = 0
BLAST hit in the rice genome = BEL1-related homeotic protein 30, putative, expressed


Probe for Locus
HAR35_20156
Locus
POPA1_1300
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare