GrainGenes Marker Report: POPA1_1308
Locus
POPA1_1308
Type
SNP
Chromosome
3H
Chromosome Arm
3HS
Map
Barley-Core-2014_3H 34.52 Hordeum-OPA-2009-3H 28.44 Hordeum-OPA123-2008-3H 28.44 Hordeum-OPAConsensus-2011-3H 29.09
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_6206
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1308 Most representative HarvEST:Barley Assembly #32 Unigene = 9978 Most representative HarvEST:Barley Assembly #35 Unigene = 6206 HarvEST Unigene 35 Probe Set = Contig12923_at Unigene 35 Rice Locus = LOC_Os12g40760 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-36 Original SNP name = ABC12923-sfp84-01 Original SNP name = ABC22737_1_28 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-36 BLAST hit in the rice genome = expressed protein
Probe for Locus
HAR35_6206
Locus
POPA1_1308
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1308
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